PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G096600.1
Common NamePOPTR_0011s09890g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 409aa    MW: 44495.2 Da    PI: 7.0003
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G096600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.63.8e-37351532104
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssase 72 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++                    s+++++ 
  Potri.011G096600.1  35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTSIDELAELpawdpttagftpktsktatrSTKQQNI 125
                         89**************************************************************777666664443322222222222222 PP

                 TCP  73 ceaesssssasnsssg..........kaaksaa.kskksqksa 104
                                                   + a+s+  + +++q++ 
  Potri.011G096600.1 126 ---------------CdekeyglsveNVATSKIaEVQNTQQQM 153
                         ...............2333445555422222221222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3335151IPR005333Transcription factor, TCP
PROSITE profilePS5136933.6373795IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGESHHQAAT SSRLGISNTV GEIVEVQGGL IVRPTGRKDR HSKVCTAKGP RDRRVRLSAH  60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKT SIDELAELPA WDPTTAGFTP KTSKTATRST  120
KQQNICDEKE YGLSVENVAT SKIAEVQNTQ QQMAENPNSS LGFLPPSLES DVIADTIKTF  180
FPILGASTET SSPTIQFQNY PPDLMSRTSS QSQDLRLSLL SFQGPILLQH QAHHHGHQAQ  240
SEHQVFSGTT AHHVGFDCSS GGWSEQHHPQ EITRFQRNLV AWNAADAGSG GGGSAGLIFN  300
APLPPPQTMP PSPLVQPFFG QNQFFSQRGT LQSSNTPSFR AWIDPAITPD HHLQLQQQQQ  360
QTAISGIGFT ASDGGFSGFR VPTRIQGEEE ERDGIHNKPS SASSDSRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.158131e-148catkin| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317368.10.0TCP1 family protein
SwissprotQ8LPR51e-104TCP4_ARATH; Transcription factor TCP4
TrEMBLB9I1D40.0B9I1D4_POPTR; TCP1 family protein
STRINGPOPTR_0011s09890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-88TCP family protein